Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
60
total RNA-seq
11
ATAC-seq
6
DNase-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
79
DNA binding
66
Transcription
17
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
54
histone
54
histone modification
36
broad histone mark
18
control
18
narrow histone mark
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
50
May, 2019
February, 2023
26
October, 2019
8
July, 2019
6
August, 2021
4
June, 2019
3
February, 2020
3
March, 2020
Available data
155
bam
128
bigWig
78
bed narrowPeak
67
tsv
63
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
166
Homo sapiens
Biosample type
98
tissue
66
cell line
2
primary cell
Organ
871
pancreas
790
liver
670
connective tissue
490
adipose tissue
epithelium
357
heart
354
kidney
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
166
AMP
Genome assembly (visualization)
136
GRCh38
136
hg19
Lab
166
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.ERROR.category!
inconsistent replicate
month_released!
February, 2023
September, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
166 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
tibial artery
23
1
1
2
aorta
13
1
4
2
1
1
ascending aorta
16
2
1
thoracic aorta
16
2
1
coronary artery
5
1
1
2
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
smooth muscle cell of the brain vasculature
1
smooth muscle cell of the coronary artery
1
See all biosamples
Download