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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
68
ChIP-seq
19
ATAC-seq
4
single cell RNA-seq
2
Capture-C
2
DNase-seq
2
pCHi-C
1
Hi-C
1
RRBS
Assay category
80
Transcription
68
DNA binding
21
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
38
histone
38
histone modification
22
transcription factor
20
broad histone mark
17
narrow histone mark
8
control
4
RNA binding protein
2
chromatin remodeller
Date released
69
February, 2021
68
August, 2017
June, 2019
13
February, 2023
6
July, 2019
6
November, 2020
4
August, 2021
3
October, 2019
2
April, 2018
2
July, 2018
2
May, 2021
March, 2020
Available data
134
bam
131
bigWig
76
tsv
57
fastq
48
bed narrowPeak
16
bed bed3+
14
tagAlign
6
bed bed3
4
bed bedgraph
4
bigBed narrowPeak
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
175
Homo sapiens
Biosample type
96
in vitro differentiated cells
59
tissue
20
primary cell
Organ
928
pancreas
785
liver
664
connective tissue
498
epithelium
adipose tissue
351
heart
271
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
48
musculature of body
43
nerve
37
embryo
24
spleen
21
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
174
AMP
1
T1D
Genome assembly (visualization)
150
hg19
128
GRCh38
Lab
170
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
5
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
audit.ERROR.category!
inconsistent replicate
month_released!
June, 2019
March, 2020
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
175 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
Capture-C
DNase-seq
pCHi-C
Hi-C
RRBS
in vitro differentiated cells
adipocyte
5
67
8
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
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tissue
bone tissue
58
islet of Langerhans
1
primary cell
osteoblast
5
2
1
1
pancreatic stellate cell
4
adult endothelial progenitor cell
1
brain pericyte
1
cardiac atrium fibroblast
1
+ See 4 more…
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