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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
25
ChIP-seq
18
small RNA-seq
12
WGBS
9
RRBS
6
ATAC-seq
6
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
25
DNA binding
21
DNA methylation
8
DNA accessibility
6
3D chromatin structure
Target of assay
14
transcription factor
7
control
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
3
narrow histone mark
Date released
682
February, 2021
400
November, 2017
382
August, 2017
372
May, 2021
341
May, 2020
313
August, 2021
279
October, 2019
198
June, 2019
153
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
88
November, 2018
80
April, 2019
75
December, 2017
74
October, 2018
57
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
8
January, 2018
6
September, 2017
5
March, 2019
5
March, 2023
4
December, 2019
2
June, 2018
1
August, 2018
1
August, 2022
1
October, 2022
Available data
107
bam
104
bigWig
65
tsv
30
fastq
28
bed narrowPeak
23
bigBed narrowPeak
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3+
2
hdf5
Organism
125
Homo sapiens
Biosample type
84
tissue
23
cell line
18
primary cell
Organ
25
heart
18
blood
18
bodily fluid
18
brain
18
connective tissue
15
liver
epithelium
12
adipose tissue
12
vasculature
11
blood vessel
11
kidney
10
musculature of body
7
spleen
6
pancreas
5
limb
3
artery
2
pericardium
1
eye
Project
125
AMP
Genome assembly (visualization)
104
hg19
100
GRCh38
Lab
125
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.ERROR.category!
inconsistent replicate
organ_slims!
epithelium
thymus
BIOSAMPLE
ASSAY
125 results
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Clear Filters
total RNA-seq
ChIP-seq
small RNA-seq
WGBS
RRBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
4
1
2
spleen
7
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 27 more…
cell line
GM12878
18
HepG2
5
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 10 more…
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