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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
28
snATAC-seq
7
single cell RNA-seq
2
RNA microarray
1
ATAC-seq
1
Hi-C
Assay category
29
DNA accessibility
28
DNA binding
7
Transcription
1
3D chromatin structure
Target of assay
28
transcription factor
3
chromatin remodeller
Date released
33
February, 2021
27
December, 2017
4
December, 2019
1
December, 2018
1
May, 2022
1
October, 2019
Available data
55
fastq
29
bam
29
bed narrowPeak
28
bigBed narrowPeak
28
bigWig
9
tsv
6
txt
5
csv
1
bed bed3
1
bed bed3+
1
hic
Organism
67
Homo sapiens
Biosample type
35
tissue
28
primary cell
2
cell line
2
in vitro differentiated cells
Organ
28
liver
7
kidney
5
epithelium
pancreas
1
blood
1
blood vessel
1
bodily fluid
1
musculature of body
1
vasculature
1
vein
Project
40
AMP
27
HPAP
Genome assembly (visualization)
31
hg19
29
GRCh38
Lab
40
AMP-T2D consortium
27
Klaus Kaestner, Upenn
Audit category:
272
inconsistent ontology term
38
audit script error
28
inconsistent control
1
inconsistent replicate
organ_slims!
pancreas
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
RNA microarray
ATAC-seq
Hi-C
tissue
liver
27
kidney
5
kidney interstitium
1
renal glomerulus
1
skeletal muscle tissue
1
primary cell
Langerhans cell
27
endothelial cell of umbilical vein
1
cell line
GM12878
1
HepG2
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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