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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
snATAC-seq
27
ChIP-seq
4
Hi-C
2
single cell RNA-seq
Assay category
29
DNA accessibility
27
DNA binding
4
3D chromatin structure
2
Transcription
Target of assay
27
transcription factor
2
chromatin remodeller
Date released
27
December, 2017
27
February, 2021
3
October, 2022
2
December, 2019
1
August, 2022
1
May, 2022
1
October, 2019
Available data
54
fastq
27
bam
27
bed narrowPeak
27
bigBed narrowPeak
27
bigWig
4
hic
3
bedpe bed3+
3
cool
2
tsv
1
bed bed3+
1
txt
Organism
62
Homo sapiens
Biosample type
31
primary cell
29
tissue
2
in vitro differentiated cells
Organ
27
liver
kidney
5
epithelium
4
pancreas
1
blood
1
blood vessel
bodily fluid
1
musculature of body
1
vasculature
1
vein
Project
32
AMP
30
HPAP
Genome assembly (visualization)
32
hg19
27
GRCh38
Lab
32
AMP-T2D consortium
30
Klaus Kaestner, Upenn
Audit category:
330
inconsistent ontology term
35
audit script error
27
inconsistent control
1
inconsistent replicate
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
bodily fluid
kidney
BIOSAMPLE
ASSAY
62 results
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snATAC-seq
ChIP-seq
Hi-C
single cell RNA-seq
primary cell
Langerhans cell
27
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
tissue
liver
27
islet of Langerhans
1
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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