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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
21
ChIP-seq
20
ATAC-seq
6
MeRIP-seq
5
Hi-C
2
Capture-C
1
DNase-seq
1
RNA microarray
1
RRBS
1
single cell RNA-seq
Assay category
34
Transcription
21
DNA accessibility
21
DNA binding
5
3D chromatin structure
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
narrow histone mark
7
control
6
broad histone mark
3
RNA binding protein
3
nucleotide modification
3
transcription factor
Date released
26
February, 2021
21
May, 2021
16
November, 2019
6
November, 2020
5
March, 2020
4
June, 2019
3
May, 2019
3
October, 2022
2
August, 2021
2
October, 2019
1
December, 2019
1
July, 2018
1
July, 2019
Available data
58
bam
54
bigWig
36
tsv
20
bed narrowPeak
5
bigBed narrowPeak
5
hic
4
bedpe bed3+
3
cool
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
fastq
Organism
91
Homo sapiens
Biosample type
76
cell line
14
primary cell
in vitro differentiated cells
1
tissue
Organ
91
epithelium
85
pancreas
84
bone element
30
kidney
15
connective tissue
10
musculature of body
6
heart
3
brain
2
vasculature
1
adipose tissue
1
blood vessel
1
limb
1
liver
1
stomach
1
urinary bladder
1
vein
Project
84
AMP
4
T1D
3
HPAP
Genome assembly (visualization)
62
hg19
54
GRCh38
Lab
82
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
3
Klaus Kaestner, Upenn
Audit category:
86
inconsistent ontology term
5
audit script error
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
91 results
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total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Hi-C
Capture-C
DNase-seq
RNA microarray
RRBS
single cell RNA-seq
cell line
EndoC_BH1
33
15
19
6
1
2
primary cell
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
pancreatic acinar cell
1
1
Liver fetal (hepatocyte)
1
endothelial cell of umbilical vein
1
+ See 2 more…
tissue
renal glomerulus
1
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