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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
total RNA-seq
21
ChIP-seq
19
ATAC-seq
3
MeRIP-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
STARR-seq
Assay category
36
Transcription
21
DNA binding
19
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
9
transcription factor
control
7
recombinant protein
6
broad histone mark
6
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
chromatin remodeller
Date released
26
February, 2021
21
May, 2021
14
November, 2019
10
October, 2019
7
March, 2020
3
August, 2021
3
November, 2020
1
December, 2018
Available data
59
bigWig
58
bam
39
tsv
22
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
fastq
1
hic
Organism
85
Homo sapiens
Biosample type
117
tissue
113
in vitro differentiated cells
85
cell line
28
primary cell
1
stem cell
Organ
71
epithelium
71
pancreas
12
kidney
1
blood
1
bodily fluid
Project
81
AMP
4
T1D
Genome assembly (visualization)
61
hg19
58
GRCh38
Lab
81
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
month_released!
June, 2019
target.investigated_as!
control
BIOSAMPLE
ASSAY
85 results
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total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
pCHi-C
Hi-C
STARR-seq
cell line
EndoC_BH1
33
13
19
3
2
1
RCC 7860 HIF1a re-expression
1
3
RCC 7860 vector
1
2
1
RCC 7860 HIF2a over-expression
1
2
GM12878
1
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