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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
7
ATAC-seq
2
Capture-C
1
Hi-C
1
STARR-seq
1
total RNA-seq
Assay category
13
DNA binding
7
DNA accessibility
1
3D chromatin structure
1
Transcription
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
128
February, 2021
90
May, 2021
22
June, 2019
22
November, 2019
15
March, 2020
11
February, 2023
10
October, 2019
8
May, 2020
6
July, 2018
6
November, 2020
4
December, 2017
3
August, 2021
2
December, 2019
1
February, 2020
1
July, 2019
1
June, 2018
Available data
21
bam
18
bed narrowPeak
12
bigWig
1
bedpe bed3+
1
hic
1
tsv
Organism
25
Homo sapiens
Biosample type
19
cell line
5
in vitro differentiated cells
1
tissue
Organ
18
epithelium
18
pancreas
1
adipose tissue
1
connective tissue
Project
25
AMP
Genome assembly (visualization)
20
hg19
19
GRCh38
Lab
24
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
audit.ERROR.category!
inconsistent control
organ_slims!
kidney
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
ATAC-seq
Capture-C
Hi-C
STARR-seq
total RNA-seq
cell line
EndoC_BH1
13
1
2
1
1
Synthesized DNA
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
tissue
adipose tissue(adipose white tissue)
1
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