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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
3
total RNA-seq
2
pCHi-C
1
DNase-seq
1
RRBS
Assay category
16
DNA binding
3
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
9
transcription factor
7
recombinant protein
5
control
2
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
13
October, 2019
4
June, 2019
3
May, 2019
2
March, 2020
1
July, 2019
Available data
20
bam
15
bigWig
12
bed narrowPeak
5
bigBed narrowPeak
5
tsv
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
23
Homo sapiens
Biosample type
15
cell line
8
primary cell
Organ
91
epithelium
84
bone element
81
pancreas
23
kidney
19
connective tissue
9
musculature of body
6
embryo
6
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
0
pericardium
Project
23
AMP
Genome assembly (visualization)
16
hg19
15
GRCh38
Lab
23
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
7
audit script error
audit.WARNING.category!
inconsistent assembly
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
total RNA-seq
pCHi-C
DNase-seq
RRBS
cell line
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 VHL
1
primary cell
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
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