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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
single cell RNA-seq
3
ChIP-seq
Assay category
7
Transcription
3
DNA binding
Target of assay
2
control
1
histone
1
histone modification
1
narrow histone mark
Date released
6
July, 2018
3
December, 2017
1
June, 2018
Available data
207
bam
188
bigWig
147
tsv
58
bed narrowPeak
23
bigBed narrowPeak
10
fastq
7
bedpe bed3+
5
bed bed3+
5
hic
3
bed broadPeak
3
bigBed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
1
txt
Organism
10
Homo sapiens
Biosample type
7
primary cell
3
in vitro differentiated cells
Organ
5
pancreas
4
epithelium
3
embryo
Project
10
AMP
Genome assembly (visualization)
8
GRCh38
8
hg19
Lab
10
AMP-T2D consortium
Audit category:
27
audit script error
10
inconsistent ontology term
1
inconsistent control
Audit category:
inconsistent control read length
audit.WARNING.category!
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
10 results
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single cell RNA-seq
ChIP-seq
primary cell
co-expressing pancreatic endocrine cell
2
unclassified exocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
3
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