Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
19
ATAC-seq
18
ChIP-seq
3
MeRIP-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
STARR-seq
Assay category
34
Transcription
19
DNA accessibility
18
DNA binding
1
3D chromatin structure
Target of assay
10
histone
10
histone modification
control
8
transcription factor
7
recombinant protein
6
broad histone mark
4
narrow histone mark
3
nucleotide modification
1
RNA binding protein
Date released
26
February, 2021
20
May, 2021
14
November, 2019
10
October, 2019
4
March, 2020
3
August, 2021
3
November, 2020
Available data
54
bigWig
53
bam
37
tsv
19
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
80
Homo sapiens
Biosample type
113
in vitro differentiated cells
91
tissue
80
cell line
44
primary cell
1
stem cell
Organ
67
epithelium
67
pancreas
12
kidney
Project
80
AMP
T1D
Genome assembly (visualization)
56
hg19
53
GRCh38
Lab
76
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
80
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
award.project!
T1D
target.investigated_as!
control
BIOSAMPLE
ASSAY
80 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
pCHi-C
Hi-C
STARR-seq
cell line
EndoC_BH1
31
19
11
3
2
1
RCC 7860 HIF1a re-expression
1
3
RCC 7860 vector
1
2
1
RCC 7860 HIF2a over-expression
1
2
RCC 7860 VHL
1
+ See 1 more…
See all biosamples
Download