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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
17
ATAC-seq
14
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
Hi-C
Assay category
31
Transcription
17
DNA accessibility
14
DNA binding
1
3D chromatin structure
Target of assay
11
histone
11
histone modification
6
broad histone mark
5
control
5
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
16
November, 2019
6
November, 2020
March, 2020
2
August, 2021
Available data
46
bam
43
bigWig
31
tsv
13
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
71
Homo sapiens
Biosample type
71
cell line
Organ
71
epithelium
71
pancreas
Project
70
AMP
1
T1D
Genome assembly (visualization)
45
hg19
44
GRCh38
Lab
65
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
71
inconsistent ontology term
month_released!
March, 2020
BIOSAMPLE
ASSAY
71 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
Hi-C
cell line
EndoC_BH1
31
17
14
6
2
1
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