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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
ChIP-seq
3
total RNA-seq
2
ATAC-seq
Assay category
5
DNA binding
3
Transcription
2
DNA accessibility
Target of assay
7
recombinant protein
transcription factor
3
control
2
histone
2
histone modification
2
narrow histone mark
Date released
110
February, 2021
22
May, 2021
16
June, 2019
10
March, 2020
10
November, 2019
10
October, 2019
8
May, 2020
6
February, 2023
6
July, 2018
6
November, 2020
3
August, 2021
2
July, 2019
2
May, 2019
1
February, 2020
1
June, 2018
Available data
10
bam
5
bigWig
4
bed narrowPeak
3
tsv
Organism
10
Homo sapiens
Biosample type
6
cell line
in vitro differentiated cells
2
primary cell
2
tissue
Organ
6
kidney
2
brain
1
epithelium
1
liver
Project
10
AMP
Genome assembly (visualization)
7
GRCh38
7
hg19
Lab
10
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
audit script error
biosample_type!
in vitro differentiated cells
target.investigated_as!
broad histone mark
transcription factor
BIOSAMPLE
ASSAY
10 results
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ChIP-seq
total RNA-seq
ATAC-seq
cell line
RCC 7860 HIF1a re-expression
1
1
RCC 7860 HIF2a over-expression
1
1
RCC 7860 vector
1
1
primary cell
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
tissue
brodmann area 43
1
insular gyrus
1
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