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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
total RNA-seq
18
ATAC-seq
3
MeRIP-seq
2
Capture-C
2
pCHi-C
1
Hi-C
1
STARR-seq
Assay category
36
Transcription
18
DNA accessibility
1
3D chromatin structure
Target of assay
control
3
nucleotide modification
Date released
26
February, 2021
20
May, 2021
6
March, 2020
3
August, 2021
3
November, 2020
3
October, 2019
2
November, 2019
Available data
58
bigWig
57
bam
39
tsv
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
63
Homo sapiens
Biosample type
100
in vitro differentiated cells
87
tissue
63
cell line
24
primary cell
1
stem cell
Organ
57
epithelium
57
pancreas
5
kidney
Project
61
AMP
2
T1D
Genome assembly (visualization)
39
hg19
36
GRCh38
Lab
59
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
Audit category:
63
inconsistent ontology term
files.file_type!
bed narrowPeak
month_released!
December, 2017
target.investigated_as!
control
BIOSAMPLE
ASSAY
63 results
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total RNA-seq
ATAC-seq
MeRIP-seq
Capture-C
pCHi-C
Hi-C
STARR-seq
cell line
EndoC_BH1
33
18
3
2
1
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
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