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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
total RNA-seq
20
ChIP-seq
2
ATAC-seq
2
pCHi-C
Assay category
36
Transcription
20
DNA binding
2
DNA accessibility
Target of assay
12
histone
12
histone modification
8
transcription factor
7
recombinant protein
6
broad histone mark
6
narrow histone mark
1
RNA binding protein
Date released
26
February, 2021
13
November, 2019
10
October, 2019
6
March, 2020
5
May, 2021
Available data
62
bam
58
bigWig
39
tsv
21
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
60
Homo sapiens
Biosample type
103
in vitro differentiated cells
60
cell line
42
primary cell
7
tissue
1
stem cell
Organ
48
epithelium
48
pancreas
12
kidney
Project
56
AMP
4
T1D
Genome assembly (visualization)
58
hg19
57
GRCh38
Lab
60
AMP-T2D consortium
Audit category:
60
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
month_released!
February, 2018
BIOSAMPLE
ASSAY
60 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
cell line
EndoC_BH1
33
13
2
RCC 7860 HIF1a re-expression
1
3
RCC 7860 vector
1
2
1
RCC 7860 HIF2a over-expression
1
2
RCC 7860 VHL
1
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