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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
7
single cell RNA-seq
4
ChIP-seq
4
total RNA-seq
2
RRBS
1
pCHi-C
Assay category
12
DNA accessibility
11
Transcription
4
DNA binding
2
DNA methylation
Target of assay
4
control
Date released
8
May, 2020
6
February, 2023
6
July, 2018
3
June, 2019
2
July, 2019
2
October, 2019
1
June, 2018
1
May, 2019
1
May, 2021
Available data
37
bam
31
bigWig
18
bed narrowPeak
17
tsv
bigBed narrowPeak
7
fastq
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
30
Homo sapiens
Biosample type
115
in vitro differentiated cells
92
cell line
90
tissue
30
primary cell
1
stem cell
Organ
5
epithelium
5
pancreas
3
connective tissue
3
kidney
2
heart
1
liver
musculature of body
Project
25
AMP
5
T1D
Genome assembly (visualization)
19
hg19
13
GRCh38
Lab
25
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
31
audit script error
30
inconsistent ontology term
files.file_type!
bigBed narrowPeak
organ_slims!
bodily fluid
musculature of body
BIOSAMPLE
ASSAY
30 results
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ATAC-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
RRBS
pCHi-C
primary cell
naive B cel
2
2
1
central memory CD8-positive, alpha-beta T cell
2
2
gabaergic neuron
3
microglial cell/astrocyte
3
cardiac fibroblast
1
1
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