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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ChIP-seq
12
ATAC-seq
7
single cell RNA-seq
4
total RNA-seq
2
DNase-seq
2
RRBS
1
pCHi-C
Assay category
22
DNA binding
14
DNA accessibility
11
Transcription
2
DNA methylation
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
4
control
2
RNA binding protein
2
transcription factor
Date released
24
June, 2019
8
May, 2020
6
February, 2023
6
July, 2018
May, 2019
2
July, 2019
2
October, 2019
1
June, 2018
1
May, 2021
Available data
41
bam
35
bigWig
22
bed narrowPeak
20
bigBed narrowPeak
17
tsv
7
fastq
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
50
Homo sapiens
Biosample type
115
in vitro differentiated cells
92
cell line
91
tissue
50
primary cell
1
stem cell
Organ
13
connective tissue
8
musculature of body
7
epithelium
6
heart
5
kidney
5
pancreas
1
liver
vasculature
Project
45
AMP
5
T1D
Genome assembly (visualization)
39
hg19
33
GRCh38
Lab
45
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
50
inconsistent ontology term
30
audit script error
files.file_type!
tagAlign bed3+
month_released!
May, 2019
organ_slims!
vasculature
BIOSAMPLE
ASSAY
50 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
pCHi-C
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
4
1
1
epithelial cell of proximal tubule
3
1
1
naive B cel
2
2
1
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