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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
8
ChIP-seq
7
single cell RNA-seq
4
total RNA-seq
3
DNase-seq
2
RRBS
1
pCHi-C
Assay category
15
DNA accessibility
11
Transcription
8
DNA binding
2
DNA methylation
Target of assay
17
histone
histone modification
9
narrow histone mark
8
broad histone mark
5
control
3
RNA binding protein
3
transcription factor
Date released
9
June, 2019
8
May, 2020
6
February, 2023
6
July, 2018
2
July, 2019
2
May, 2019
2
October, 2019
1
June, 2018
1
May, 2021
Available data
28
bam
21
bigWig
17
tsv
8
bed narrowPeak
7
fastq
6
bigBed narrowPeak
3
bed bed3+
3
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
37
Homo sapiens
Biosample type
112
in vitro differentiated cells
80
cell line
37
primary cell
5
tissue
1
stem cell
Organ
8
epithelium
6
kidney
5
connective tissue
5
pancreas
4
heart
1
liver
1
musculature of body
1
vasculature
Project
32
AMP
5
T1D
Genome assembly (visualization)
25
hg19
19
GRCh38
Lab
32
AMP-T2D consortium
5
Kyle Gaulton, UCSD
Audit category:
37
inconsistent ontology term
31
audit script error
files.file_type!
txt
month_released!
August, 2020
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
37 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
pCHi-C
primary cell
naive B cel
2
2
1
cardiac fibroblast
2
1
1
central memory CD8-positive, alpha-beta T cell
2
2
epithelial cell of proximal tubule
2
1
1
gabaergic neuron
3
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