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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
2
ChIP-seq
2
pCHi-C
1
DNase-seq
1
total RNA-seq
Assay category
2
DNA binding
1
DNA accessibility
1
Transcription
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
2
March, 2020
2
October, 2019
1
February, 2020
1
June, 2019
Available data
txt
3
bam
3
bed narrowPeak
3
bigWig
3
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
6
Homo sapiens
Biosample type
110
in vitro differentiated cells
92
cell line
41
primary cell
6
tissue
Organ
3
brain
1
adipose tissue
connective tissue
1
limb
1
musculature of body
1
stomach
1
urinary bladder
Project
6
AMP
Genome assembly (visualization)
3
GRCh38
3
hg19
Lab
6
AMP-T2D consortium
Audit category:
27
inconsistent control
6
inconsistent ontology term
3
audit script error
biosample_type!
stem cell
files.file_type!
txt
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
6 results
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ChIP-seq
pCHi-C
DNase-seq
total RNA-seq
tissue
bladder (urinary bladder)
1
brodmann area 43
1
cerebellum (Hemisphere)
1
gastric (mucosa of stomach)
1
insular gyrus
1
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