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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
ChIP-seq
3
total RNA-seq
2
pCHi-C
1
RRBS
Assay category
5
DNA binding
3
Transcription
1
DNA methylation
Target of assay
5
control
Date released
6
October, 2019
2
March, 2020
1
July, 2019
1
June, 2019
1
May, 2019
Available data
20
bam
15
bigWig
bed narrowPeak
5
bigBed narrowPeak
5
tsv
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
11
Homo sapiens
Biosample type
8
cell line
3
primary cell
Organ
84
bone element
67
epithelium
65
pancreas
11
kidney
8
connective tissue
4
embryo
2
heart
1
brain
1
musculature of body
1
stomach
1
urinary bladder
Project
11
AMP
Genome assembly (visualization)
4
hg19
3
GRCh38
Lab
11
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
7
audit script error
files.file_type!
bed narrowPeak
month_released!
August, 2021
BIOSAMPLE
ASSAY
11 results
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ChIP-seq
total RNA-seq
pCHi-C
RRBS
cell line
RCC 7860 vector
1
1
1
RCC 7860 HIF1a re-expression
1
1
RCC 7860 HIF2a over-expression
1
1
RCC 7860 VHL
1
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
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