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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
18
ATAC-seq
6
MeRIP-seq
4
ChIP-seq
2
Capture-C
1
RRBS
1
single cell RNA-seq
Assay category
34
Transcription
18
DNA accessibility
4
DNA binding
1
DNA methylation
Target of assay
7
control
3
nucleotide modification
Date released
26
February, 2021
21
May, 2021
6
November, 2020
4
March, 2020
November, 2019
2
August, 2021
2
December, 2017
1
July, 2018
1
July, 2019
1
June, 2019
1
May, 2019
Available data
48
bam
45
bigWig
35
tsv
bed narrowPeak
5
bigBed narrowPeak
5
fastq
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
65
Homo sapiens
Biosample type
58
cell line
4
primary cell
3
in vitro differentiated cells
Organ
84
bone element
65
epithelium
63
pancreas
11
kidney
8
connective tissue
4
embryo
2
heart
1
brain
1
musculature of body
1
stomach
1
urinary bladder
Project
63
AMP
2
T1D
Genome assembly (visualization)
37
hg19
34
GRCh38
Lab
59
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
65
inconsistent ontology term
5
audit script error
files.file_type!
bed narrowPeak
month_released!
November, 2019
BIOSAMPLE
ASSAY
65 results
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total RNA-seq
ATAC-seq
MeRIP-seq
ChIP-seq
Capture-C
RRBS
single cell RNA-seq
cell line
EndoC_BH1
32
18
6
2
primary cell
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
2
intermediate endothelial cell
1
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