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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
18
ATAC-seq
6
MeRIP-seq
5
single cell RNA-seq
2
Capture-C
2
ChIP-seq
1
Hi-C
Assay category
38
Transcription
18
DNA accessibility
2
DNA binding
1
3D chromatin structure
Target of assay
5
control
3
nucleotide modification
Date released
26
February, 2021
20
May, 2021
6
November, 2020
5
July, 2018
4
March, 2020
4
November, 2019
2
August, 2021
Available data
54
bam
53
bigWig
39
tsv
bed narrowPeak
5
fastq
1
bedpe bed3+
1
hic
Organism
67
Homo sapiens
Biosample type
62
cell line
5
primary cell
Organ
84
bone element
69
epithelium
67
pancreas
11
kidney
8
connective tissue
4
embryo
2
heart
1
brain
1
musculature of body
1
stomach
1
urinary bladder
Project
65
AMP
2
T1D
Genome assembly (visualization)
41
hg19
38
GRCh38
Lab
61
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
67
inconsistent ontology term
4
audit script error
files.file_type!
bed narrowPeak
organ_slims!
skin of body
BIOSAMPLE
ASSAY
67 results
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total RNA-seq
ATAC-seq
MeRIP-seq
single cell RNA-seq
Capture-C
ChIP-seq
Hi-C
cell line
EndoC_BH1
33
18
6
2
2
1
primary cell
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
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