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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
29
ATAC-seq
12
ChIP-seq
6
MeRIP-seq
5
Hi-C
3
pCHi-C
2
Capture-C
2
RRBS
2
total RNA-seq
1
STARR-seq
Assay category
29
DNA accessibility
12
DNA binding
5
3D chromatin structure
2
DNA methylation
2
Transcription
Target of assay
15
control
3
nucleotide modification
Date released
84
February, 2021
17
May, 2021
10
November, 2019
9
October, 2019
6
November, 2020
4
February, 2023
4
June, 2019
4
March, 2020
3
August, 2021
2
December, 2017
2
July, 2019
1
May, 2019
Available data
212
bam
bigWig
tsv
85
txt
63
bed narrowPeak
24
bigBed narrowPeak
11
fastq
7
bedpe bed3+
6
bed bed3+
5
hic
4
bed broadPeak
4
bigBed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
Organism
146
Homo sapiens
Biosample type
85
tissue
32
cell line
19
in vitro differentiated cells
10
primary cell
Organ
84
bone element
34
epithelium
28
pancreas
8
connective tissue
6
kidney
2
embryo
2
heart
1
adipose tissue
1
liver
1
musculature of body
Project
145
AMP
1
T1D
Genome assembly (visualization)
22
hg19
11
GRCh38
Lab
138
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Audit category:
146
inconsistent ontology term
33
audit script error
1
inconsistent replicate
files.file_type!
bigWig
tsv
lab.title!
Mark McCarthy, Oxford
BIOSAMPLE
ASSAY
146 results
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RNA microarray
ATAC-seq
ChIP-seq
MeRIP-seq
Hi-C
pCHi-C
Capture-C
RRBS
total RNA-seq
STARR-seq
tissue
bone element
84
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
17
2
6
1
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
Synthesized DNA
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes (cardiac muscle cell)
1
2
1
immature adipocyte
2
2
Hepatic endoderm
2
cardiac precursors (cardiac muscle cell)
1
1
+ See 1 more…
primary cell
cardiac fibroblast
1
1
epithelial cell of proximal tubule
1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
kidney epithelial cell
1
+ See 3 more…
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