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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
total RNA-seq
6
MeRIP-seq
5
single cell RNA-seq
2
ATAC-seq
2
Capture-C
1
ChIP-seq
Assay category
33
Transcription
2
DNA accessibility
1
DNA binding
Target of assay
3
control
3
nucleotide modification
1
histone
1
histone modification
1
narrow histone mark
Date released
26
February, 2021
May, 2021
November, 2019
6
November, 2020
5
July, 2018
5
March, 2020
2
August, 2021
Available data
36
bigWig
34
bam
34
tsv
5
fastq
1
bed narrowPeak
Organism
44
Homo sapiens
Biosample type
39
cell line
5
primary cell
Organ
84
bone element
53
epithelium
44
pancreas
23
kidney
18
connective tissue
9
musculature of body
6
heart
4
embryo
3
brain
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
41
AMP
3
T1D
Genome assembly (visualization)
36
hg19
34
GRCh38
Lab
38
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
44
inconsistent ontology term
4
audit script error
files.file_type!
tagAlign
month_released!
May, 2021
November, 2019
BIOSAMPLE
ASSAY
44 results
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total RNA-seq
MeRIP-seq
single cell RNA-seq
ATAC-seq
Capture-C
ChIP-seq
cell line
EndoC_BH1
28
6
2
2
1
primary cell
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
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