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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
2
pCHi-C
1
DNase-seq
1
RRBS
Assay category
6
DNA binding
1
DNA accessibility
1
DNA methylation
Target of assay
2
RNA binding protein
2
control
2
histone
2
histone modification
2
narrow histone mark
2
transcription factor
Date released
October, 2019
4
June, 2019
3
May, 2019
2
March, 2020
1
July, 2019
Available data
7
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
bigWig
2
tsv
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
10
Homo sapiens
Biosample type
8
primary cell
2
cell line
Organ
90
epithelium
84
bone element
81
pancreas
19
connective tissue
10
kidney
9
musculature of body
6
embryo
6
heart
1
adipose tissue
1
brain
1
limb
1
stomach
1
urinary bladder
1
vasculature
0
pericardium
Project
10
AMP
Genome assembly (visualization)
6
hg19
5
GRCh38
Lab
10
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
7
audit script error
files.file_type!
tagAlign bed3+
month_released!
October, 2019
BIOSAMPLE
ASSAY
10 results
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ChIP-seq
pCHi-C
DNase-seq
RRBS
primary cell
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
cell line
RCC 7860 VHL
1
RCC 7860 vector
1
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