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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
25
ChIP-seq
20
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
DNase-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
35
Transcription
25
DNA binding
21
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
16
histone
16
histone modification
10
narrow histone mark
9
control
6
broad histone mark
3
RNA binding protein
3
nucleotide modification
3
transcription factor
Date released
26
February, 2021
22
May, 2021
16
November, 2019
6
November, 2020
5
March, 2020
4
December, 2017
4
June, 2019
3
May, 2019
2
August, 2021
1
July, 2018
1
July, 2019
1
October, 2019
Available data
63
bam
57
bigWig
36
tsv
22
bed narrowPeak
5
bigBed narrowPeak
5
fastq
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hic
Organism
91
Homo sapiens
Biosample type
76
cell line
10
primary cell
5
in vitro differentiated cells
Organ
91
epithelium
84
bone element
81
pancreas
23
kidney
19
connective tissue
9
musculature of body
6
embryo
6
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
0
intestine
0
spinal cord
Project
87
AMP
4
T1D
Genome assembly (visualization)
61
hg19
57
GRCh38
Lab
85
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
91
inconsistent ontology term
5
audit script error
Audit category:
1
inconsistent control read length
files.file_type!
tagAlign bed3+
BIOSAMPLE
ASSAY
91 results
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total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
DNase-seq
Hi-C
RRBS
single cell RNA-seq
cell line
EndoC_BH1
33
15
19
6
2
1
primary cell
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
4
intermediate endothelial cell
1
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