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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
5
total RNA-seq
4
ATAC-seq
2
Hi-C
Assay category
10
DNA binding
5
Transcription
4
DNA accessibility
2
3D chromatin structure
Target of assay
7
recombinant protein
7
transcription factor
3
control
histone
2
histone modification
2
narrow histone mark
Date released
89
May, 2021
44
February, 2021
21
October, 2019
16
March, 2020
12
November, 2019
10
February, 2023
10
June, 2019
8
May, 2020
6
July, 2018
6
November, 2020
3
August, 2021
2
December, 2017
2
December, 2019
2
July, 2019
2
May, 2019
1
February, 2020
1
June, 2018
Available data
19
bam
12
bigWig
11
bed narrowPeak
5
tsv
2
bedpe bed3+
2
hic
Organism
21
Homo sapiens
Biosample type
13
cell line
6
in vitro differentiated cells
2
primary cell
Organ
13
kidney
1
epithelium
1
liver
Project
21
AMP
Genome assembly (visualization)
18
hg19
16
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
21
inconsistent ontology term
1
audit script error
files.file_type!
txt
target.investigated_as!
histone
BIOSAMPLE
ASSAY
21 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
cell line
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
primary cell
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
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