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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
19
ChIP-seq
2
ATAC-seq
1
DNase-seq
1
single cell RNA-seq
Assay category
35
Transcription
19
DNA binding
3
DNA accessibility
Target of assay
16
histone
16
histone modification
10
narrow histone mark
6
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
26
February, 2021
12
November, 2019
6
May, 2021
5
March, 2020
3
June, 2019
2
December, 2017
2
May, 2019
1
July, 2018
Available data
63
bam
57
bigWig
36
tsv
22
bed narrowPeak
5
bigBed narrowPeak
5
fastq
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hic
Organism
57
Homo sapiens
Biosample type
48
cell line
6
primary cell
3
in vitro differentiated cells
Organ
57
epithelium
53
pancreas
15
kidney
10
connective tissue
8
musculature of body
4
embryo
4
heart
2
brain
1
limb
1
vasculature
Project
53
AMP
4
T1D
Genome assembly (visualization)
57
hg19
55
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
57
inconsistent ontology term
Audit category:
1
inconsistent control read length
month_released!
August, 2018
organ_slims!
ureter
BIOSAMPLE
ASSAY
57 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
cell line
EndoC_BH1
33
13
2
primary cell
epithelial cell of proximal tubule
2
1
kidney epithelial cell
2
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
2
intermediate endothelial cell
1
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