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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
total RNA-seq
20
ChIP-seq
6
MeRIP-seq
4
ATAC-seq
2
Capture-C
2
DNase-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
30
Transcription
20
DNA binding
6
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
13
histone
13
histone modification
7
control
7
narrow histone mark
6
broad histone mark
3
RNA binding protein
3
nucleotide modification
3
transcription factor
Date released
26
February, 2021
May, 2021
16
November, 2019
6
November, 2020
5
June, 2019
5
March, 2020
December, 2017
3
May, 2019
2
August, 2021
1
July, 2018
1
July, 2019
1
October, 2019
Available data
54
bam
50
bigWig
31
tsv
20
bed narrowPeak
6
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
fastq
1
hic
Organism
66
Homo sapiens
Biosample type
55
cell line
10
primary cell
1
tissue
Organ
84
bone element
65
epithelium
60
pancreas
23
kidney
19
connective tissue
9
musculature of body
6
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
63
AMP
3
T1D
Genome assembly (visualization)
54
hg19
50
GRCh38
Lab
60
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
66
inconsistent ontology term
5
audit script error
month_released!
December, 2017
May, 2021
BIOSAMPLE
ASSAY
66 results
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Clear Filters
total RNA-seq
ChIP-seq
MeRIP-seq
ATAC-seq
Capture-C
DNase-seq
Hi-C
RRBS
single cell RNA-seq
cell line
EndoC_BH1
29
14
6
3
2
1
primary cell
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
tissue
muscle of leg
1
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