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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
20
ATAC-seq
15
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
DNase-seq
1
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
35
Transcription
21
DNA accessibility
15
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
16
histone
16
histone modification
narrow histone mark
9
control
6
broad histone mark
3
RNA binding protein
3
nucleotide modification
3
transcription factor
Date released
26
February, 2021
21
May, 2021
12
November, 2019
6
November, 2020
4
March, 2020
3
June, 2019
2
August, 2021
2
December, 2017
2
May, 2019
1
July, 2018
1
July, 2019
1
October, 2019
Available data
53
bam
47
bigWig
36
tsv
12
bed narrowPeak
3
bigBed narrowPeak
3
fastq
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hic
Organism
81
Homo sapiens
Biosample type
70
cell line
8
primary cell
3
in vitro differentiated cells
Organ
84
bone element
81
epithelium
75
pancreas
21
kidney
15
connective tissue
6
musculature of body
4
embryo
4
heart
1
adipose tissue
1
brain
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
79
AMP
2
T1D
Genome assembly (visualization)
51
hg19
47
GRCh38
Lab
75
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
81
inconsistent ontology term
5
audit script error
month_released!
June, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
81 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
DNase-seq
Hi-C
RRBS
single cell RNA-seq
cell line
EndoC_BH1
33
19
9
6
2
1
primary cell
epithelial cell of proximal tubule
2
1
1
kidney epithelial cell
2
Liver fetal (hepatocyte)
1
pancreatic acinar cell
1
in vitro differentiated cells
Hepatic endoderm
2
intermediate endothelial cell
1
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