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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
17
ATAC-seq
14
ChIP-seq
6
MeRIP-seq
5
single cell RNA-seq
2
Capture-C
1
Hi-C
Assay category
36
Transcription
17
DNA accessibility
14
DNA binding
1
3D chromatin structure
Target of assay
11
histone
11
histone modification
6
broad histone mark
5
control
5
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
16
November, 2019
6
November, 2020
5
July, 2018
March, 2020
2
August, 2021
Available data
51
bam
48
bigWig
36
tsv
13
bed narrowPeak
5
fastq
1
bedpe bed3+
1
hic
Organism
76
Homo sapiens
Biosample type
71
cell line
5
primary cell
Organ
86
epithelium
84
bone element
76
pancreas
21
kidney
18
connective tissue
9
musculature of body
embryo
6
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
vasculature
Project
75
AMP
1
T1D
Genome assembly (visualization)
50
hg19
49
GRCh38
Lab
70
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
76
inconsistent ontology term
4
audit script error
month_released!
March, 2020
organ_slims!
embryo
BIOSAMPLE
ASSAY
76 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
single cell RNA-seq
Capture-C
Hi-C
cell line
EndoC_BH1
31
17
14
6
2
1
primary cell
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
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