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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
pCHi-C
4
total RNA-seq
2
ATAC-seq
2
Hi-C
1
ChIP-seq
Assay category
4
Transcription
2
3D chromatin structure
2
DNA accessibility
1
DNA binding
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
128
February, 2021
90
May, 2021
26
June, 2019
23
October, 2019
22
November, 2019
17
March, 2020
11
February, 2023
8
May, 2020
6
July, 2018
6
November, 2020
4
December, 2017
3
August, 2021
3
May, 2019
2
December, 2019
2
July, 2019
1
February, 2020
1
June, 2018
0
August, 2022
Available data
11
tsv
7
bigWig
5
bam
4
bedpe bed3+
2
hic
2
ibed
1
bed narrowPeak
Organism
17
Homo sapiens
Biosample type
7
cell line
7
in vitro differentiated cells
2
tissue
1
stem cell
Organ
5
epithelium
5
pancreas
2
kidney
1
connective tissue
1
stomach
1
urinary bladder
Project
14
AMP
3
T1D
Genome assembly (visualization)
11
hg19
5
GRCh38
Lab
17
AMP-T2D consortium
Audit category:
17
inconsistent ontology term
1
audit script error
month_released!
January, 2018
BIOSAMPLE
ASSAY
17 results
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pCHi-C
total RNA-seq
ATAC-seq
Hi-C
ChIP-seq
cell line
EndoC_BH1
2
2
1
RCC 7860 VHL
1
RCC 7860 vector
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
1
lymphocyte of B lineage (iPSC)
1
1
1
tissue
bladder (urinary bladder)
1
gastric (mucosa of stomach)
1
stem cell
mesenchymal stem cell
1
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