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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
21
ChIP-seq
20
ATAC-seq
6
MeRIP-seq
5
single cell RNA-seq
2
Capture-C
1
DNase-seq
1
Hi-C
1
RRBS
Assay category
39
Transcription
21
DNA accessibility
21
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
narrow histone mark
7
control
6
broad histone mark
3
RNA binding protein
3
nucleotide modification
3
transcription factor
Date released
26
February, 2021
22
May, 2021
16
November, 2019
6
November, 2020
5
July, 2018
5
March, 2020
4
June, 2019
3
May, 2019
2
August, 2021
1
July, 2019
1
October, 2019
Available data
63
bam
59
bigWig
40
tsv
20
bed narrowPeak
5
bigBed narrowPeak
5
fastq
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hic
Organism
91
Homo sapiens
Biosample type
76
cell line
14
primary cell
1
in vitro differentiated cells
Organ
91
epithelium
84
bone element
81
pancreas
23
kidney
19
connective tissue
9
musculature of body
embryo
6
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
87
AMP
4
T1D
Genome assembly (visualization)
63
hg19
59
GRCh38
Lab
85
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
91
inconsistent ontology term
6
audit script error
organ_slims!
embryo
BIOSAMPLE
ASSAY
91 results
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total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
single cell RNA-seq
Capture-C
DNase-seq
Hi-C
RRBS
cell line
EndoC_BH1
33
15
19
6
2
1
primary cell
epithelial cell of proximal tubule
3
1
1
kidney epithelial cell
3
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
Liver fetal (hepatocyte)
1
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in vitro differentiated cells
intermediate endothelial cell
1
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