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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ChIP-seq
3
total RNA-seq
2
pCHi-C
1
DNase-seq
1
RRBS
Assay category
4
DNA binding
3
Transcription
1
DNA accessibility
1
DNA methylation
Target of assay
9
transcription factor
recombinant protein
control
2
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
3
June, 2019
3
October, 2019
2
March, 2020
2
May, 2019
1
July, 2019
Available data
8
bam
8
bigWig
5
bed narrowPeak
5
bigBed narrowPeak
5
tsv
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
Organism
11
Homo sapiens
Biosample type
6
primary cell
5
cell line
Organ
bone element
82
epithelium
76
pancreas
17
connective tissue
11
kidney
8
musculature of body
5
heart
4
embryo
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
11
AMP
Genome assembly (visualization)
9
hg19
8
GRCh38
Lab
11
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
7
audit script error
organ_slims!
bone element
target.investigated_as!
control
recombinant protein
BIOSAMPLE
ASSAY
11 results
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ChIP-seq
total RNA-seq
pCHi-C
DNase-seq
RRBS
primary cell
epithelial cell of proximal tubule
2
1
1
kidney epithelial cell
2
cell line
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
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