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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ChIP-seq
136
total RNA-seq
40
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
150
DNA binding
138
Transcription
40
DNA accessibility
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
45
broad histone mark
42
narrow histone mark
33
transcription factor
29
control
9
RNA binding protein
2
chromatin remodeller
Date released
132
May, 2021
62
August, 2017
42
August, 2021
39
February, 2018
December, 2017
26
February, 2021
16
February, 2023
8
March, 2020
6
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
243
bam
220
bigWig
131
tsv
98
bed narrowPeak
93
fastq
40
tagAlign
13
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
343
Homo sapiens
Biosample type
2181
tissue
935
primary cell
343
in vitro differentiated cells
306
cell line
7
stem cell
Organ
89
connective tissue
16
embryo
5
epithelium
3
pancreas
1
adipose tissue
1
heart
Project
343
AMP
Genome assembly (visualization)
251
hg19
221
GRCh38
4
hg18
Lab
289
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
8
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
files.file_type!
bigBed narrowPeak
month_released!
December, 2017
BIOSAMPLE
ASSAY
343 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
62
5
6
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
neural progenitor cell
21
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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