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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
21
ATAC-seq
1
DNase-seq
Assay category
93
DNA binding
22
DNA accessibility
Target of assay
71
histone
71
histone modification
38
narrow histone mark
32
broad histone mark
22
transcription factor
6
RNA binding protein
1
chromatin remodeller
Date released
37
August, 2017
25
August, 2021
25
December, 2017
14
February, 2018
5
May, 2021
5
November, 2019
2
February, 2023
2
October, 2019
Available data
268
bam
237
bigWig
131
tsv
118
fastq
115
bed narrowPeak
40
tagAlign
17
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
115
Homo sapiens
Biosample type
974
tissue
373
cell line
258
primary cell
115
in vitro differentiated cells
Organ
39
connective tissue
17
epithelium
14
liver
11
embryo
2
pancreas
Project
115
AMP
Genome assembly (visualization)
114
hg19
111
GRCh38
Lab
111
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
12
inconsistent ontology term
Audit category:
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
36
1
1
neural progenitor cell
13
10
hepatocyte
14
pancreatic endoderm
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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