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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
188
ChIP-seq
97
total RNA-seq
29
ATAC-seq
10
DNase-seq
10
WGBS
6
single cell RNA-seq
3
RRBS
2
FAIRE-seq
Assay category
188
DNA binding
103
Transcription
41
DNA accessibility
13
DNA methylation
Target of assay
67
control
61
transcription factor
60
histone modification
59
histone
38
broad histone mark
21
narrow histone mark
14
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
148
August, 2017
57
October, 2018
48
December, 2017
26
November, 2018
24
May, 2022
13
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
July, 2018
1
March, 2019
Available data
1876
bam
1741
bigWig
1076
tsv
974
bed narrowPeak
552
bigBed narrowPeak
345
fastq
234
tagAlign
211
bed broadPeak
191
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
338
Homo sapiens
Biosample type
393
cell line
360
primary cell
345
tissue
118
in vitro differentiated cells
2
stem cell
Organ
198
pancreas
82
liver
31
adipose tissue
31
connective tissue
24
spleen
8
brain
2
musculature of body
Project
345
AMP
Genome assembly (visualization)
263
hg19
249
GRCh38
Lab
319
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
Audit category:
missing controlled_by
Audit category:
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
345 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
18
97
20
1
6
1
liver
66
2
1
1
body of pancreas
32
4
2
2
spleen
20
1
1
2
pancreas
12
2
1
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