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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
241
ChIP-seq
89
total RNA-seq
7
WGBS
5
ATAC-seq
5
DNase-seq
2
RRBS
1
FAIRE-seq
Assay category
241
DNA binding
89
Transcription
11
DNA accessibility
9
DNA methylation
Target of assay
173
histone modification
172
histone
101
broad histone mark
70
narrow histone mark
50
control
18
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
378
November, 2017
350
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
85
July, 2019
82
December, 2017
80
April, 2019
75
November, 2018
75
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
37
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
232
fastq
227
bam
217
bigWig
125
bed narrowPeak
89
tsv
85
tagAlign
41
bed broadPeak
36
bigBed narrowPeak
15
bed bed3+
15
bigBed broadPeak
bed bedMethyl
6
bigBed bedMethyl
Organism
343
Homo sapiens
Biosample type
252
tissue
57
in vitro differentiated cells
41
primary cell
Organ
158
pancreas
100
connective tissue
52
liver
43
adipose tissue
25
epithelium
24
musculature of body
Project
350
AMP
Genome assembly (visualization)
217
hg19
192
GRCh38
Lab
350
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
audit.WARNING.category!
inconsistent control read length
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
350 results
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ChIP-seq
total RNA-seq
WGBS
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
32
89
1
1
liver
47
3
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
2
pancreas
10
+ See 3 more…
in vitro differentiated cells
adipocyte
56
1
primary cell
skeletal muscle myoblast
14
2
pancreatic alpha cell
11
1
pancreatic beta cell
11
1
pancreatic acinar cell
1
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