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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
9
DNase-seq
1
FAIRE-seq
Assay category
58
DNA binding
10
DNA accessibility
Target of assay
58
transcription factor
20
RNA binding protein
15
recombinant protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
287
November, 2017
210
June, 2019
189
October, 2019
133
May, 2021
125
August, 2017
106
August, 2021
97
May, 2019
68
November, 2018
65
April, 2019
65
February, 2023
61
December, 2017
44
October, 2018
40
May, 2024
38
May, 2022
37
November, 2019
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
14
February, 2018
14
September, 2018
9
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
82
fastq
81
bam
75
bigWig
68
bed narrowPeak
68
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
68
Homo sapiens
Biosample type
51
cell line
17
tissue
Organ
46
liver
12
blood
12
bodily fluid
4
spleen
3
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
68
AMP
Genome assembly (visualization)
67
GRCh38
66
hg19
Lab
68
AMP-T2D consortium
Audit category:
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
68 results
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ChIP-seq
DNase-seq
FAIRE-seq
cell line
HepG2
39
GM12878
12
tissue
liver
4
2
spleen
3
1
body of pancreas
2
brain
2
omental fat pad
1
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