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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
3
WGBS
3
single cell RNA-seq
2
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
67
DNA binding
4
DNA accessibility
3
DNA methylation
3
Transcription
Target of assay
26
histone
26
histone modification
25
control
16
transcription factor
13
narrow histone mark
12
broad histone mark
9
RNA binding protein
Date released
49
August, 2017
23
October, 2018
2
July, 2018
1
April, 2018
1
August, 2018
1
November, 2018
1
October, 2017
Available data
570
bam
547
bigWig
478
tsv
78
fastq
69
bed narrowPeak
28
bigBed narrowPeak
22
tagAlign
19
bed bed3+
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
78
Homo sapiens
Biosample type
44
in vitro differentiated cells
31
tissue
3
primary cell
Organ
430
liver
408
pancreas
231
epithelium
78
connective tissue
60
blood
60
bodily fluid
32
adipose tissue
24
spleen
23
embryo
17
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
78
AMP
Genome assembly (visualization)
52
GRCh38
50
hg19
Lab
78
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
78 results
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ChIP-seq
WGBS
single cell RNA-seq
ATAC-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
42
1
white fat cell
1
tissue
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
adipose tissue
2
3
primary cell
pancreatic stellate cell
3
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