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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
2
Hi-C
Assay category
2
3D chromatin structure
Date released
1
August, 2021
1
November, 2019
Available data
563
bam
504
bigWig
412
fastq
388
bed narrowPeak
341
bigBed narrowPeak
117
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
2
Homo sapiens
Biosample type
11
tissue
4
in vitro differentiated cells
2
cell line
2
primary cell
Organ
1
epithelium
1
liver
1
pancreas
Project
2
AMP
Genome assembly (visualization)
2
hg19
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
audit.NOT_COMPLIANT.category!
missing controlled_by
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
2 results
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Hi-C
cell line
EndoC_BH1
1
HepG2
1
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