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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
ChIP-seq
1
Hi-C
Assay category
5
DNA binding
1
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
broad histone mark
2
chromatin remodeller
2
transcription factor
1
RNA binding protein
1
narrow histone mark
Date released
3
August, 2017
2
November, 2018
1
October, 2019
Available data
6
bigWig
5
bam
5
bed narrowPeak
5
bigBed narrowPeak
5
fastq
2
bed broadPeak
2
tagAlign
1
bed bed3+
1
bigBed broadPeak
1
hdf5
Organism
5
Homo sapiens
Biosample type
3
cell line
2
primary cell
1
tissue
Organ
2
liver
2
pancreas
Project
6
AMP
Genome assembly (visualization)
6
GRCh38
6
hg19
Lab
6
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
51
inconsistent control read length
4
inconsistent assembly
3
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
6 results
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ChIP-seq
Hi-C
cell line
HepG2
2
Panc1
1
primary cell
skeletal muscle myoblast
2
tissue
pancreas
1
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