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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
Assay category
48
DNA binding
Target of assay
29
histone
29
histone modification
19
transcription factor
15
narrow histone mark
14
broad histone mark
8
chromatin remodeller
4
RNA binding protein
1
recombinant protein
Date released
18
November, 2017
16
August, 2017
8
December, 2017
3
November, 2018
2
February, 2018
1
October, 2018
Available data
48
bam
48
bigWig
48
fastq
46
bed narrowPeak
26
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
9
bed bed3+
Organism
48
Homo sapiens
Biosample type
21
cell line
14
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
22
liver
9
pancreas
6
connective tissue
5
epithelium
embryo
Project
48
AMP
Genome assembly (visualization)
48
hg19
45
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
48
inconsistent control read length
3
inconsistent assembly
3
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
embryo
limb
BIOSAMPLE
ASSAY
48 results
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Clear Filters
ChIP-seq
cell line
HepG2
21
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
primitive gut cell
2
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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