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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
Assay category
26
DNA binding
Target of assay
16
histone
16
histone modification
10
transcription factor
8
broad histone mark
8
narrow histone mark
6
chromatin remodeller
4
RNA binding protein
1
recombinant protein
Date released
16
November, 2017
6
August, 2017
3
November, 2018
1
October, 2018
Available data
51
bam
51
bigWig
51
fastq
49
bed narrowPeak
26
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
26
Homo sapiens
Biosample type
19
cell line
6
tissue
1
primary cell
Organ
20
liver
5
pancreas
Project
26
AMP
Genome assembly (visualization)
26
hg19
25
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
26
inconsistent control read length
3
inconsistent assembly
3
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
May, 2022
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
cell line
HepG2
19
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
skeletal muscle myoblast
1
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