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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
Assay category
43
DNA binding
Target of assay
26
histone
26
histone modification
17
transcription factor
15
broad histone mark
11
narrow histone mark
5
chromatin remodeller
3
RNA binding protein
1
recombinant protein
Date released
18
November, 2017
12
August, 2017
10
December, 2017
November, 2018
2
February, 2018
1
October, 2018
Available data
43
bam
43
bigWig
43
fastq
41
bed narrowPeak
23
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
43
Homo sapiens
Biosample type
18
cell line
16
in vitro differentiated cells
6
tissue
2
stem cell
1
primary cell
Organ
19
liver
9
pancreas
6
connective tissue
epithelium
3
embryo
Project
43
AMP
Genome assembly (visualization)
43
hg19
40
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
43
inconsistent control read length
4
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
November, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
43 results
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Clear Filters
ChIP-seq
cell line
HepG2
18
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
tissue
pancreas
4
body of pancreas
1
liver
1
stem cell
hESC
2
primary cell
skeletal muscle myoblast
1
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