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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
Assay category
44
DNA binding
Target of assay
29
histone
29
histone modification
19
transcription factor
15
narrow histone mark
14
broad histone mark
8
chromatin remodeller
RNA binding protein
1
recombinant protein
Date released
16
August, 2017
15
November, 2017
8
December, 2017
2
February, 2018
2
November, 2018
1
October, 2018
Available data
44
bam
44
bigWig
44
fastq
42
bed narrowPeak
22
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
11
tagAlign
9
bed bed3+
Organism
44
Homo sapiens
Biosample type
17
cell line
14
in vitro differentiated cells
6
tissue
5
primary cell
2
stem cell
Organ
18
liver
9
pancreas
6
connective tissue
5
epithelium
embryo
Project
44
AMP
Genome assembly (visualization)
44
hg19
41
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
44
inconsistent control read length
4
inconsistent assembly
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
embryo
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
cell line
HepG2
17
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
primitive gut cell
2
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
stem cell
hESC
2
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