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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
819
ChIP-seq
576
total RNA-seq
254
ATAC-seq
176
DNase-seq
133
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
16
Hi-C
14
small RNA-seq
7
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
819
DNA binding
723
Transcription
462
DNA accessibility
16
3D chromatin structure
9
DNA methylation
Target of assay
587
histone modification
586
histone
307
narrow histone mark
279
broad histone mark
163
control
71
transcription factor
22
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
228
August, 2021
214
August, 2017
193
May, 2020
162
June, 2019
120
July, 2018
115
May, 2019
101
February, 2021
94
February, 2023
82
November, 2017
80
April, 2019
66
May, 2022
53
July, 2019
51
October, 2018
48
December, 2017
40
May, 2021
40
May, 2024
39
March, 2020
39
November, 2019
23
February, 2020
19
April, 2020
19
November, 2018
18
October, 2017
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1396
bam
1278
bigWig
967
bed narrowPeak
619
tsv
548
bigBed narrowPeak
320
fastq
226
tagAlign
208
bed broadPeak
189
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2138
Homo sapiens
Biosample type
2146
tissue
996
primary cell
648
cell line
296
in vitro differentiated cells
9
stem cell
Organ
connective tissue
489
pancreas
474
adipose tissue
360
liver
306
heart
260
brain
251
kidney
158
bone element
132
blood vessel
132
vasculature
121
limb
79
musculature of body
73
artery
56
eye
43
nerve
23
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2096
AMP
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1352
GRCh38
1251
hg19
Lab
1841
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
award.project!
KPMP
files.file_type!
bed bedMethyl
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
2146 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RRBS
tissue
islet of Langerhans
60
292
68
1
6
7
4
3
1
4
liver
145
167
20
2
1
1
1
1
3
kidney
27
49
75
13
17
6
1
1
bone element
84
heart left ventricle
35
3
2
3
18
1
1
2
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