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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
574
ChIP-seq
194
total RNA-seq
24
ATAC-seq
8
DNase-seq
5
WGBS
3
pCHi-C
3
small RNA-seq
2
Hi-C
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
574
DNA binding
198
Transcription
32
DNA accessibility
7
DNA methylation
2
3D chromatin structure
1
DNA sequencing
Target of assay
326
transcription factor
126
histone modification
125
histone
119
control
81
recombinant protein
67
narrow histone mark
58
broad histone mark
56
RNA binding protein
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
305
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
50
November, 2018
49
October, 2019
40
May, 2022
34
August, 2021
10
July, 2019
5
December, 2019
5
January, 2019
3
February, 2021
2
February, 2020
2
June, 2019
2
March, 2020
1
December, 2018
Available data
710
bam
641
bigWig
456
bed narrowPeak
452
fastq
372
bigBed narrowPeak
179
tsv
86
tagAlign
65
bed broadPeak
65
bigBed broadPeak
15
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
819
Homo sapiens
Biosample type
403
tissue
387
cell line
15
in vitro differentiated cells
14
primary cell
Organ
885
pancreas
776
liver
666
connective tissue
498
epithelium
478
adipose tissue
390
heart
354
kidney
282
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
21
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
819
AMP
Genome assembly (visualization)
642
hg19
557
GRCh38
Lab
749
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
missing controlled_by
Audit category:
22
inconsistent control read length
2
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
award.project!
LungMap
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
819 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
145
167
20
2
3
1
1
1
1
tibial nerve
35
5
1
2
right lobe of liver
10
3
1
2
1
2
cell line
HepG2
365
14
1
1
2
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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