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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
90
total RNA-seq
16
ATAC-seq
9
WGBS
6
RRBS
5
DNase-seq
3
single cell RNA-seq
1
FAIRE-seq
Assay category
257
DNA binding
93
Transcription
22
DNA accessibility
15
DNA methylation
Target of assay
183
histone modification
182
histone
104
broad histone mark
77
narrow histone mark
50
control
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
399
May, 2021
396
November, 2017
372
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
93
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
41
September, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
19
October, 2017
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
June, 2018
1
August, 2022
Available data
248
fastq
243
bam
233
bigWig
141
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
19
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
380
Homo sapiens
Biosample type
277
tissue
63
in vitro differentiated cells
47
primary cell
Organ
166
pancreas
109
connective tissue
54
liver
46
adipose tissue
29
epithelium
26
musculature of body
14
kidney
Project
387
AMP
Genome assembly (visualization)
238
hg19
222
GRCh38
Lab
373
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.NOT_COMPLIANT.category!
missing controlled_by
award.project!
LungMap
month_released!
June, 2018
BIOSAMPLE
ASSAY
387 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
RRBS
DNase-seq
single cell RNA-seq
FAIRE-seq
tissue
islet of Langerhans
32
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
kidney
11
3
+ See 4 more…
in vitro differentiated cells
adipocyte
62
1
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic acinar cell
1
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