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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
829
ChIP-seq
437
total RNA-seq
241
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
27
WGBS
24
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
829
DNA binding
627
Transcription
441
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
591
histone modification
590
histone
299
broad histone mark
291
narrow histone mark
164
control
76
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
February, 2021
262
August, 2017
242
October, 2019
229
August, 2021
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
82
November, 2017
80
April, 2019
77
February, 2023
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
36
March, 2020
26
November, 2018
25
February, 2020
19
April, 2020
19
October, 2017
15
May, 2023
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1235
bam
1131
bigWig
943
bed narrowPeak
558
bigBed narrowPeak
481
tsv
351
fastq
211
bed broadPeak
191
bed bed3+
184
tagAlign
176
bigBed broadPeak
68
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1973
Homo sapiens
Biosample type
1982
tissue
690
primary cell
543
cell line
362
in vitro differentiated cells
10
stem cell
Organ
465
pancreas
313
heart
291
kidney
261
brain
167
liver
133
blood vessel
133
vasculature
116
limb
91
connective tissue
90
adipose tissue
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
1916
AMP
47
KPMP
T1D
19
LungMap
Genome assembly (visualization)
1218
GRCh38
1106
hg19
Lab
1657
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
25
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
4
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
audit.NOT_COMPLIANT.category!
missing controlled_by
award.project!
T1D
month_released!
February, 2021
May, 2020
BIOSAMPLE
ASSAY
1982 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
59
285
57
1
6
4
1
3
1
1
4
kidney
27
49
75
13
59
6
1
1
1
liver
95
24
20
2
3
1
1
1
1
heart left ventricle
35
3
2
3
18
4
1
1
1
left cardiac atrium
40
1
18
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